Summary Statistics
21.GS.C4B.AYT.20.IB
Data summary
| Name |
ayt20_sindex |
| Number of rows |
21 |
| Number of columns |
13 |
| _______________________ |
|
| Column type frequency: |
|
| character |
1 |
| numeric |
12 |
| ________________________ |
|
| Group variables |
None |
Variable type: character
| accession_name |
0 |
1 |
7 |
18 |
0 |
21 |
0 |
Variable type: numeric
Data summary
| sprout |
0 |
1 |
0.95 |
0.07 |
0.64 |
0.95 |
0.96 |
0.99 |
0.99 |
▁▁▁▁▇ |
| rtno |
0 |
1 |
197.73 |
12.20 |
178.22 |
188.53 |
196.17 |
206.05 |
223.48 |
▇▇▃▇▂ |
| shtwt |
0 |
1 |
48.02 |
4.10 |
40.56 |
45.82 |
48.48 |
49.11 |
59.73 |
▃▇▇▂▁ |
| rtwt |
0 |
1 |
70.68 |
4.22 |
60.16 |
68.58 |
70.61 |
73.20 |
76.67 |
▁▃▆▇▆ |
| fyld |
0 |
1 |
35.34 |
2.11 |
30.08 |
34.29 |
35.30 |
36.60 |
38.33 |
▁▃▆▇▆ |
| dm |
0 |
1 |
40.17 |
1.23 |
37.39 |
39.59 |
40.38 |
40.89 |
42.22 |
▂▁▇▇▃ |
| dyld |
0 |
1 |
14.20 |
0.49 |
13.01 |
14.00 |
14.26 |
14.46 |
14.99 |
▁▃▆▇▆ |
| hi |
0 |
1 |
0.60 |
0.03 |
0.53 |
0.58 |
0.60 |
0.61 |
0.64 |
▁▃▃▇▅ |
| l |
0 |
1 |
87.46 |
0.21 |
87.03 |
87.36 |
87.51 |
87.56 |
87.92 |
▂▂▇▃▁ |
| a |
0 |
1 |
0.39 |
0.13 |
0.20 |
0.31 |
0.37 |
0.43 |
0.82 |
▆▇▃▁▁ |
| b |
0 |
1 |
17.95 |
4.90 |
14.84 |
15.55 |
16.41 |
16.90 |
31.01 |
▇▁▁▁▁ |
| sindex |
0 |
1 |
-0.97 |
79.64 |
-173.61 |
-44.70 |
15.39 |
55.38 |
106.80 |
▂▁▇▇▇ |
| Name |
ayt20_sindex_checkdiff |
| Number of rows |
21 |
| Number of columns |
14 |
| _______________________ |
|
| Column type frequency: |
|
| character |
1 |
| factor |
1 |
| numeric |
12 |
| ________________________ |
|
| Group variables |
None |
Variable type: character
| accession_name |
0 |
1 |
7 |
18 |
0 |
21 |
0 |
Variable type: factor
| rank |
0 |
1 |
FALSE |
21 |
1: 1, 2: 1, 3: 1, 4: 1 |
Variable type: numeric
| sprout |
0 |
1 |
-1.39 |
7.73 |
-33.33 |
-1.04 |
0.00 |
3.12 |
3.12 |
▁▁▁▁▇ |
| rtno |
0 |
1 |
2.30 |
6.31 |
-7.80 |
-2.46 |
1.49 |
6.60 |
15.62 |
▇▇▃▇▂ |
| shtwt |
0 |
1 |
-1.13 |
8.44 |
-16.49 |
-5.66 |
-0.18 |
1.12 |
22.99 |
▃▇▇▂▁ |
| rtwt |
0 |
1 |
1.34 |
6.05 |
-13.74 |
-1.67 |
1.24 |
4.95 |
9.93 |
▁▃▆▇▆ |
| fyld |
0 |
1 |
1.33 |
6.05 |
-13.75 |
-1.68 |
1.22 |
4.95 |
9.91 |
▁▃▆▇▆ |
| dm |
0 |
1 |
-0.14 |
3.05 |
-7.05 |
-1.58 |
0.38 |
1.65 |
4.96 |
▂▁▇▇▃ |
| dyld |
0 |
1 |
0.61 |
3.49 |
-7.81 |
-0.79 |
1.05 |
2.47 |
6.22 |
▁▃▆▇▆ |
| hi |
0 |
1 |
1.13 |
4.65 |
-10.17 |
-1.69 |
1.69 |
3.39 |
8.47 |
▁▃▃▇▅ |
| l |
0 |
1 |
-0.03 |
0.24 |
-0.52 |
-0.14 |
0.03 |
0.09 |
0.50 |
▂▂▇▃▁ |
| a |
0 |
1 |
19.34 |
40.31 |
-38.14 |
-4.12 |
14.43 |
32.99 |
153.61 |
▆▇▃▁▁ |
| b |
0 |
1 |
10.44 |
30.13 |
-8.71 |
-4.34 |
0.95 |
3.97 |
90.77 |
▇▁▁▁▁ |
| sindex |
0 |
1 |
-0.97 |
79.64 |
-173.61 |
-44.70 |
15.39 |
55.38 |
106.80 |
▂▁▇▇▇ |
Phenotypic Values
Phenotypic Values and Selection Index

Raw phenotypic values difference from check mean

Check Mean Data
table include check_mean values
|
accession_name
|
sprout
|
rtno
|
shtwt
|
rtwt
|
fyld
|
dm
|
dyld
|
hi
|
l
|
a
|
b
|
sindex
|
|
IITA-TMS-IBA000070
|
0.95
|
190.48
|
43.85
|
75.75
|
37.87
|
40.89
|
14.99
|
0.64
|
87.70
|
0.25
|
15.55
|
106.80
|
|
TMS18F1083P0032
|
0.96
|
208.75
|
45.07
|
73.20
|
36.60
|
42.08
|
14.88
|
0.62
|
87.51
|
0.43
|
15.72
|
98.45
|
|
TMS19F1219P0091
|
0.96
|
189.58
|
59.73
|
76.67
|
38.33
|
37.81
|
14.44
|
0.57
|
87.10
|
0.53
|
31.01
|
91.42
|
|
TMS18F1139P0088
|
0.92
|
205.00
|
48.48
|
76.31
|
38.15
|
39.59
|
14.77
|
0.61
|
87.67
|
0.35
|
15.34
|
88.29
|
|
TMS18F1317P0102
|
0.92
|
189.13
|
49.38
|
72.96
|
36.48
|
40.84
|
14.61
|
0.60
|
87.40
|
0.47
|
14.99
|
57.63
|
|
TMS19F1189P0046
|
0.93
|
223.48
|
49.11
|
75.57
|
37.78
|
37.39
|
14.24
|
0.61
|
87.06
|
0.82
|
30.98
|
55.38
|
|
TMS18F1280P0121
|
0.99
|
209.35
|
44.47
|
72.17
|
36.09
|
41.37
|
14.61
|
0.62
|
87.34
|
0.31
|
16.41
|
46.37
|
|
TMS18F1258P0113
|
0.99
|
184.19
|
46.15
|
73.47
|
36.74
|
39.71
|
14.44
|
0.62
|
87.44
|
0.35
|
16.81
|
35.78
|
|
TMS18F1447P0005
|
0.95
|
203.51
|
45.82
|
72.42
|
36.21
|
40.38
|
14.46
|
0.61
|
87.53
|
0.30
|
16.11
|
28.63
|
|
TMS18F1339P0033
|
0.98
|
206.05
|
47.12
|
73.06
|
36.53
|
39.42
|
14.34
|
0.61
|
87.58
|
0.39
|
15.03
|
26.03
|
|
TMS19F1011P0053
|
0.99
|
205.75
|
40.56
|
69.23
|
34.62
|
42.22
|
14.38
|
0.64
|
87.52
|
0.38
|
14.84
|
15.39
|
|
TMEB419
|
0.96
|
196.17
|
47.09
|
70.53
|
35.27
|
40.58
|
14.26
|
0.60
|
87.29
|
0.42
|
14.93
|
-3.40
|
|
TMS18F1258P0114
|
0.95
|
209.95
|
48.91
|
70.61
|
35.30
|
39.34
|
14.02
|
0.59
|
87.58
|
0.39
|
16.66
|
-20.63
|
|
TMS13F1160P0004
|
0.93
|
186.14
|
48.98
|
68.58
|
34.29
|
40.86
|
14.05
|
0.58
|
87.36
|
0.36
|
17.13
|
-32.66
|
|
TMS14F1036P0007
|
0.98
|
214.67
|
46.63
|
69.43
|
34.72
|
39.62
|
14.00
|
0.60
|
87.56
|
0.24
|
15.94
|
-44.70
|
|
IITA-TMS-IBA30572
|
0.95
|
188.53
|
51.62
|
66.72
|
33.36
|
40.61
|
13.81
|
0.56
|
87.43
|
0.47
|
16.66
|
-55.43
|
|
TMS18F1310P0145
|
0.99
|
202.31
|
48.69
|
65.87
|
32.94
|
41.00
|
13.73
|
0.57
|
87.92
|
0.28
|
16.90
|
-55.87
|
|
IITA-TMS-IBA980581
|
0.99
|
183.74
|
53.23
|
67.47
|
33.74
|
38.80
|
13.56
|
0.56
|
87.56
|
0.20
|
17.32
|
-93.27
|
|
TMS18F1295P0036
|
0.99
|
184.04
|
52.28
|
60.16
|
30.08
|
41.06
|
13.01
|
0.53
|
87.03
|
0.47
|
25.96
|
-170.58
|
|
TMS18F1259P0139
|
0.64
|
178.22
|
42.63
|
64.32
|
32.16
|
39.77
|
13.45
|
0.60
|
87.54
|
0.37
|
16.44
|
-173.61
|
|
check_mean
|
0.96
|
193.29
|
48.57
|
69.75
|
34.88
|
40.23
|
14.11
|
0.59
|
87.48
|
0.32
|
16.25
|
-20.44
|
Table for percent comparism to check_mean values
|
accession_name
|
sprout
|
rtno
|
shtwt
|
rtwt
|
fyld
|
dm
|
dyld
|
hi
|
l
|
a
|
b
|
sindex
|
rank
|
|
IITA-TMS-IBA000070
|
-1.04
|
-1.45
|
-9.71
|
8.61
|
8.59
|
1.65
|
6.22
|
8.47
|
0.25
|
-22.68
|
-4.34
|
106.80
|
1
|
|
TMS18F1083P0032
|
0.00
|
8.00
|
-7.20
|
4.95
|
4.95
|
4.61
|
5.44
|
5.08
|
0.03
|
32.99
|
-3.29
|
98.45
|
2
|
|
TMS19F1219P0091
|
0.00
|
-1.92
|
22.99
|
9.93
|
9.91
|
-6.01
|
2.33
|
-3.39
|
-0.44
|
63.92
|
90.77
|
91.42
|
3
|
|
TMS18F1139P0088
|
-4.17
|
6.06
|
-0.18
|
9.41
|
9.39
|
-1.58
|
4.67
|
3.39
|
0.21
|
8.25
|
-5.63
|
88.29
|
4
|
|
TMS18F1317P0102
|
-4.17
|
-2.15
|
1.67
|
4.61
|
4.60
|
1.52
|
3.53
|
1.69
|
-0.10
|
45.36
|
-7.78
|
57.63
|
5
|
|
TMS19F1189P0046
|
-3.12
|
15.62
|
1.12
|
8.35
|
8.33
|
-7.05
|
0.91
|
3.39
|
-0.48
|
153.61
|
90.59
|
55.38
|
6
|
|
TMS18F1280P0121
|
3.12
|
8.31
|
-8.44
|
3.47
|
3.48
|
2.84
|
3.53
|
5.08
|
-0.16
|
-4.12
|
0.95
|
46.37
|
7
|
|
TMS18F1258P0113
|
3.12
|
-4.71
|
-4.98
|
5.34
|
5.35
|
-1.28
|
2.33
|
5.08
|
-0.05
|
8.25
|
3.41
|
35.78
|
8
|
|
TMS18F1447P0005
|
-1.04
|
5.29
|
-5.66
|
3.83
|
3.83
|
0.38
|
2.47
|
3.39
|
0.05
|
-7.22
|
-0.89
|
28.63
|
9
|
|
TMS18F1339P0033
|
2.08
|
6.60
|
-2.98
|
4.75
|
4.75
|
-2.01
|
1.62
|
3.39
|
0.11
|
20.62
|
-7.54
|
26.03
|
10
|
|
TMS19F1011P0053
|
3.12
|
6.45
|
-16.49
|
-0.74
|
-0.73
|
4.96
|
1.90
|
8.47
|
0.04
|
17.53
|
-8.71
|
15.39
|
11
|
|
TMEB419
|
0.00
|
1.49
|
-3.04
|
1.12
|
1.13
|
0.88
|
1.05
|
1.69
|
-0.22
|
29.90
|
-8.15
|
-3.40
|
12
|
|
TMS18F1258P0114
|
-1.04
|
8.62
|
0.71
|
1.24
|
1.22
|
-2.20
|
-0.65
|
0.00
|
0.11
|
20.62
|
2.49
|
-20.63
|
13
|
|
TMS13F1160P0004
|
-3.12
|
-3.70
|
0.85
|
-1.67
|
-1.68
|
1.57
|
-0.44
|
-1.69
|
-0.14
|
11.34
|
5.38
|
-32.66
|
14
|
|
TMS14F1036P0007
|
2.08
|
11.06
|
-3.99
|
-0.45
|
-0.44
|
-1.51
|
-0.79
|
1.69
|
0.09
|
-25.77
|
-1.94
|
-44.70
|
15
|
|
IITA-TMS-IBA30572
|
-1.04
|
-2.46
|
6.29
|
-4.34
|
-4.34
|
0.95
|
-2.14
|
-5.08
|
-0.06
|
45.36
|
2.49
|
-55.43
|
16
|
|
TMS18F1310P0145
|
3.12
|
4.67
|
0.25
|
-5.56
|
-5.55
|
1.92
|
-2.70
|
-3.39
|
0.50
|
-13.40
|
3.97
|
-55.87
|
17
|
|
IITA-TMS-IBA980581
|
3.12
|
-4.94
|
9.60
|
-3.26
|
-3.25
|
-3.55
|
-3.91
|
-5.08
|
0.09
|
-38.14
|
6.55
|
-93.27
|
18
|
|
TMS18F1295P0036
|
3.12
|
-4.78
|
7.65
|
-13.74
|
-13.75
|
2.07
|
-7.81
|
-10.17
|
-0.52
|
45.36
|
59.70
|
-170.58
|
19
|
|
TMS18F1259P0139
|
-33.33
|
-7.80
|
-12.22
|
-7.78
|
-7.78
|
-1.14
|
-4.69
|
1.69
|
0.06
|
14.43
|
1.14
|
-173.61
|
20
|
|
check_mean
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
-20.44
|
21
|
Heatmaps

## TMS19F1219P0091 TMS19F1189P0046 TMS18F1295P0036 TMS18F1259P0139
## 1 1 1 1
## IITA-TMS-IBA000070 TMS18F1083P0032 TMS18F1139P0088 TMS18F1317P0102
## 2 2 2 2
## TMS18F1280P0121 TMS18F1258P0113 TMS18F1447P0005 TMS18F1339P0033
## 2 2 2 2
## TMS19F1011P0053 TMEB419 TMS18F1258P0114 TMS14F1036P0007
## 2 2 2 2
## check_mean TMS13F1160P0004 IITA-TMS-IBA30572 TMS18F1310P0145
## 2 3 3 3
## IITA-TMS-IBA980581
## 3



Correlation plots for traits and selection index comparism


Relationship between Traits and SINDEX

Selection index vs traits (%) difference to check mean

Percentage difference against checks mean

Genotype Images
IITA-TMS-IBA000070
|
Trait
|
Value
|
|
FYLD
|
37.87
|
|
DYLD
|
14.99
|
|
DM
|
40.89
|
|
SINDEX
|
106.80
|
REP 1
REP 2
TMS18F1083P0032
|
Trait
|
Value
|
|
FYLD
|
36.60
|
|
DYLD
|
14.88
|
|
DM
|
42.08
|
|
SINDEX
|
98.45
|
REP 1
TMS19F1219P0091
|
Trait
|
Value
|
|
FYLD
|
38.33
|
|
DYLD
|
14.44
|
|
DM
|
37.81
|
|
SINDEX
|
91.42
|
REP 1
REP 2
TMS18F1139P0088
|
Trait
|
Value
|
|
FYLD
|
38.15
|
|
DYLD
|
14.77
|
|
DM
|
39.59
|
|
SINDEX
|
88.29
|
REP 1
TMS18F1317P0102
|
Trait
|
Value
|
|
FYLD
|
36.48
|
|
DYLD
|
14.61
|
|
DM
|
40.84
|
|
SINDEX
|
57.63
|
REP 2
TMS19F1189P0046
|
Trait
|
Value
|
|
FYLD
|
37.78
|
|
DYLD
|
14.24
|
|
DM
|
37.39
|
|
SINDEX
|
55.38
|
REP 1
REP 2
TMS18F1258P0113
|
Trait
|
Value
|
|
FYLD
|
36.74
|
|
DYLD
|
14.44
|
|
DM
|
39.71
|
|
SINDEX
|
35.78
|
REP 1
TMS18F1447P0005
|
Trait
|
Value
|
|
FYLD
|
36.21
|
|
DYLD
|
14.46
|
|
DM
|
40.38
|
|
SINDEX
|
28.63
|
REP 1
REP 2
TMS18F1339P0033
|
Trait
|
Value
|
|
FYLD
|
36.53
|
|
DYLD
|
14.34
|
|
DM
|
39.42
|
|
SINDEX
|
26.03
|
REP 2
TMS19F1011P0053
|
Trait
|
Value
|
|
FYLD
|
34.62
|
|
DYLD
|
14.38
|
|
DM
|
42.22
|
|
SINDEX
|
15.39
|
REP 1
REP 2
TMEB419
|
Trait
|
Value
|
|
FYLD
|
35.27
|
|
DYLD
|
14.26
|
|
DM
|
40.58
|
|
SINDEX
|
-3.40
|
REP 1
REP 2
TMS18F1258P0114
|
Trait
|
Value
|
|
FYLD
|
35.30
|
|
DYLD
|
14.02
|
|
DM
|
39.34
|
|
SINDEX
|
-20.63
|
REP 1
TMS13F1160P0004
|
Trait
|
Value
|
|
FYLD
|
34.29
|
|
DYLD
|
14.05
|
|
DM
|
40.86
|
|
SINDEX
|
-32.66
|
