Selections
Summary Statistics
21.GS.C4B.AYT.20.IB
| Name | ayt20_sindex |
| Number of rows | 21 |
| Number of columns | 13 |
| _______________________ | |
| Column type frequency: | |
| character | 1 |
| numeric | 12 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| accession_name | 0 | 1 | 7 | 18 | 0 | 21 | 0 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| sprout | 0 | 1 | 0.95 | 0.07 | 0.64 | 0.95 | 0.96 | 0.99 | 0.99 | ▁▁▁▁▇ |
| rtno | 0 | 1 | 197.73 | 12.20 | 178.22 | 188.53 | 196.17 | 206.05 | 223.48 | ▇▇▃▇▂ |
| shtwt | 0 | 1 | 48.02 | 4.10 | 40.56 | 45.82 | 48.48 | 49.11 | 59.73 | ▃▇▇▂▁ |
| rtwt | 0 | 1 | 70.68 | 4.22 | 60.16 | 68.58 | 70.61 | 73.20 | 76.67 | ▁▃▆▇▆ |
| fyld | 0 | 1 | 35.34 | 2.11 | 30.08 | 34.29 | 35.30 | 36.60 | 38.33 | ▁▃▆▇▆ |
| dm | 0 | 1 | 40.17 | 1.23 | 37.39 | 39.59 | 40.38 | 40.89 | 42.22 | ▂▁▇▇▃ |
| dyld | 0 | 1 | 14.20 | 0.49 | 13.01 | 14.00 | 14.26 | 14.46 | 14.99 | ▁▃▆▇▆ |
| hi | 0 | 1 | 0.60 | 0.03 | 0.53 | 0.58 | 0.60 | 0.61 | 0.64 | ▁▃▃▇▅ |
| l | 0 | 1 | 87.46 | 0.21 | 87.03 | 87.36 | 87.51 | 87.56 | 87.92 | ▂▂▇▃▁ |
| a | 0 | 1 | 0.39 | 0.13 | 0.20 | 0.31 | 0.37 | 0.43 | 0.82 | ▆▇▃▁▁ |
| b | 0 | 1 | 17.95 | 4.90 | 14.84 | 15.55 | 16.41 | 16.90 | 31.01 | ▇▁▁▁▁ |
| sindex | 0 | 1 | -0.97 | 79.64 | -173.61 | -44.70 | 15.39 | 55.38 | 106.80 | ▂▁▇▇▇ |
| Name | ayt20_sindex_checkdiff |
| Number of rows | 21 |
| Number of columns | 14 |
| _______________________ | |
| Column type frequency: | |
| character | 1 |
| factor | 1 |
| numeric | 12 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| accession_name | 0 | 1 | 7 | 18 | 0 | 21 | 0 |
Variable type: factor
| skim_variable | n_missing | complete_rate | ordered | n_unique | top_counts |
|---|---|---|---|---|---|
| rank | 0 | 1 | FALSE | 21 | 1: 1, 2: 1, 3: 1, 4: 1 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| sprout | 0 | 1 | -1.39 | 7.73 | -33.33 | -1.04 | 0.00 | 3.12 | 3.12 | ▁▁▁▁▇ |
| rtno | 0 | 1 | 2.30 | 6.31 | -7.80 | -2.46 | 1.49 | 6.60 | 15.62 | ▇▇▃▇▂ |
| shtwt | 0 | 1 | -1.13 | 8.44 | -16.49 | -5.66 | -0.18 | 1.12 | 22.99 | ▃▇▇▂▁ |
| rtwt | 0 | 1 | 1.34 | 6.05 | -13.74 | -1.67 | 1.24 | 4.95 | 9.93 | ▁▃▆▇▆ |
| fyld | 0 | 1 | 1.33 | 6.05 | -13.75 | -1.68 | 1.22 | 4.95 | 9.91 | ▁▃▆▇▆ |
| dm | 0 | 1 | -0.14 | 3.05 | -7.05 | -1.58 | 0.38 | 1.65 | 4.96 | ▂▁▇▇▃ |
| dyld | 0 | 1 | 0.61 | 3.49 | -7.81 | -0.79 | 1.05 | 2.47 | 6.22 | ▁▃▆▇▆ |
| hi | 0 | 1 | 1.13 | 4.65 | -10.17 | -1.69 | 1.69 | 3.39 | 8.47 | ▁▃▃▇▅ |
| l | 0 | 1 | -0.03 | 0.24 | -0.52 | -0.14 | 0.03 | 0.09 | 0.50 | ▂▂▇▃▁ |
| a | 0 | 1 | 19.34 | 40.31 | -38.14 | -4.12 | 14.43 | 32.99 | 153.61 | ▆▇▃▁▁ |
| b | 0 | 1 | 10.44 | 30.13 | -8.71 | -4.34 | 0.95 | 3.97 | 90.77 | ▇▁▁▁▁ |
| sindex | 0 | 1 | -0.97 | 79.64 | -173.61 | -44.70 | 15.39 | 55.38 | 106.80 | ▂▁▇▇▇ |
Phenotypic Values
Phenotypic Values and Selection Index
Raw phenotypic values difference from check mean
Check Mean Data
table include check_mean values
| accession_name | sprout | rtno | shtwt | rtwt | fyld | dm | dyld | hi | l | a | b | sindex |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IITA-TMS-IBA000070 | 0.95 | 190.48 | 43.85 | 75.75 | 37.87 | 40.89 | 14.99 | 0.64 | 87.70 | 0.25 | 15.55 | 106.80 |
| TMS18F1083P0032 | 0.96 | 208.75 | 45.07 | 73.20 | 36.60 | 42.08 | 14.88 | 0.62 | 87.51 | 0.43 | 15.72 | 98.45 |
| TMS19F1219P0091 | 0.96 | 189.58 | 59.73 | 76.67 | 38.33 | 37.81 | 14.44 | 0.57 | 87.10 | 0.53 | 31.01 | 91.42 |
| TMS18F1139P0088 | 0.92 | 205.00 | 48.48 | 76.31 | 38.15 | 39.59 | 14.77 | 0.61 | 87.67 | 0.35 | 15.34 | 88.29 |
| TMS18F1317P0102 | 0.92 | 189.13 | 49.38 | 72.96 | 36.48 | 40.84 | 14.61 | 0.60 | 87.40 | 0.47 | 14.99 | 57.63 |
| TMS19F1189P0046 | 0.93 | 223.48 | 49.11 | 75.57 | 37.78 | 37.39 | 14.24 | 0.61 | 87.06 | 0.82 | 30.98 | 55.38 |
| TMS18F1280P0121 | 0.99 | 209.35 | 44.47 | 72.17 | 36.09 | 41.37 | 14.61 | 0.62 | 87.34 | 0.31 | 16.41 | 46.37 |
| TMS18F1258P0113 | 0.99 | 184.19 | 46.15 | 73.47 | 36.74 | 39.71 | 14.44 | 0.62 | 87.44 | 0.35 | 16.81 | 35.78 |
| TMS18F1447P0005 | 0.95 | 203.51 | 45.82 | 72.42 | 36.21 | 40.38 | 14.46 | 0.61 | 87.53 | 0.30 | 16.11 | 28.63 |
| TMS18F1339P0033 | 0.98 | 206.05 | 47.12 | 73.06 | 36.53 | 39.42 | 14.34 | 0.61 | 87.58 | 0.39 | 15.03 | 26.03 |
| TMS19F1011P0053 | 0.99 | 205.75 | 40.56 | 69.23 | 34.62 | 42.22 | 14.38 | 0.64 | 87.52 | 0.38 | 14.84 | 15.39 |
| TMEB419 | 0.96 | 196.17 | 47.09 | 70.53 | 35.27 | 40.58 | 14.26 | 0.60 | 87.29 | 0.42 | 14.93 | -3.40 |
| TMS18F1258P0114 | 0.95 | 209.95 | 48.91 | 70.61 | 35.30 | 39.34 | 14.02 | 0.59 | 87.58 | 0.39 | 16.66 | -20.63 |
| TMS13F1160P0004 | 0.93 | 186.14 | 48.98 | 68.58 | 34.29 | 40.86 | 14.05 | 0.58 | 87.36 | 0.36 | 17.13 | -32.66 |
| TMS14F1036P0007 | 0.98 | 214.67 | 46.63 | 69.43 | 34.72 | 39.62 | 14.00 | 0.60 | 87.56 | 0.24 | 15.94 | -44.70 |
| IITA-TMS-IBA30572 | 0.95 | 188.53 | 51.62 | 66.72 | 33.36 | 40.61 | 13.81 | 0.56 | 87.43 | 0.47 | 16.66 | -55.43 |
| TMS18F1310P0145 | 0.99 | 202.31 | 48.69 | 65.87 | 32.94 | 41.00 | 13.73 | 0.57 | 87.92 | 0.28 | 16.90 | -55.87 |
| IITA-TMS-IBA980581 | 0.99 | 183.74 | 53.23 | 67.47 | 33.74 | 38.80 | 13.56 | 0.56 | 87.56 | 0.20 | 17.32 | -93.27 |
| TMS18F1295P0036 | 0.99 | 184.04 | 52.28 | 60.16 | 30.08 | 41.06 | 13.01 | 0.53 | 87.03 | 0.47 | 25.96 | -170.58 |
| TMS18F1259P0139 | 0.64 | 178.22 | 42.63 | 64.32 | 32.16 | 39.77 | 13.45 | 0.60 | 87.54 | 0.37 | 16.44 | -173.61 |
| check_mean | 0.96 | 193.29 | 48.57 | 69.75 | 34.88 | 40.23 | 14.11 | 0.59 | 87.48 | 0.32 | 16.25 | -20.44 |
Table for percent comparism to check_mean values
| accession_name | sprout | rtno | shtwt | rtwt | fyld | dm | dyld | hi | l | a | b | sindex | rank |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IITA-TMS-IBA000070 | -1.04 | -1.45 | -9.71 | 8.61 | 8.59 | 1.65 | 6.22 | 8.47 | 0.25 | -22.68 | -4.34 | 106.80 | 1 |
| TMS18F1083P0032 | 0.00 | 8.00 | -7.20 | 4.95 | 4.95 | 4.61 | 5.44 | 5.08 | 0.03 | 32.99 | -3.29 | 98.45 | 2 |
| TMS19F1219P0091 | 0.00 | -1.92 | 22.99 | 9.93 | 9.91 | -6.01 | 2.33 | -3.39 | -0.44 | 63.92 | 90.77 | 91.42 | 3 |
| TMS18F1139P0088 | -4.17 | 6.06 | -0.18 | 9.41 | 9.39 | -1.58 | 4.67 | 3.39 | 0.21 | 8.25 | -5.63 | 88.29 | 4 |
| TMS18F1317P0102 | -4.17 | -2.15 | 1.67 | 4.61 | 4.60 | 1.52 | 3.53 | 1.69 | -0.10 | 45.36 | -7.78 | 57.63 | 5 |
| TMS19F1189P0046 | -3.12 | 15.62 | 1.12 | 8.35 | 8.33 | -7.05 | 0.91 | 3.39 | -0.48 | 153.61 | 90.59 | 55.38 | 6 |
| TMS18F1280P0121 | 3.12 | 8.31 | -8.44 | 3.47 | 3.48 | 2.84 | 3.53 | 5.08 | -0.16 | -4.12 | 0.95 | 46.37 | 7 |
| TMS18F1258P0113 | 3.12 | -4.71 | -4.98 | 5.34 | 5.35 | -1.28 | 2.33 | 5.08 | -0.05 | 8.25 | 3.41 | 35.78 | 8 |
| TMS18F1447P0005 | -1.04 | 5.29 | -5.66 | 3.83 | 3.83 | 0.38 | 2.47 | 3.39 | 0.05 | -7.22 | -0.89 | 28.63 | 9 |
| TMS18F1339P0033 | 2.08 | 6.60 | -2.98 | 4.75 | 4.75 | -2.01 | 1.62 | 3.39 | 0.11 | 20.62 | -7.54 | 26.03 | 10 |
| TMS19F1011P0053 | 3.12 | 6.45 | -16.49 | -0.74 | -0.73 | 4.96 | 1.90 | 8.47 | 0.04 | 17.53 | -8.71 | 15.39 | 11 |
| TMEB419 | 0.00 | 1.49 | -3.04 | 1.12 | 1.13 | 0.88 | 1.05 | 1.69 | -0.22 | 29.90 | -8.15 | -3.40 | 12 |
| TMS18F1258P0114 | -1.04 | 8.62 | 0.71 | 1.24 | 1.22 | -2.20 | -0.65 | 0.00 | 0.11 | 20.62 | 2.49 | -20.63 | 13 |
| TMS13F1160P0004 | -3.12 | -3.70 | 0.85 | -1.67 | -1.68 | 1.57 | -0.44 | -1.69 | -0.14 | 11.34 | 5.38 | -32.66 | 14 |
| TMS14F1036P0007 | 2.08 | 11.06 | -3.99 | -0.45 | -0.44 | -1.51 | -0.79 | 1.69 | 0.09 | -25.77 | -1.94 | -44.70 | 15 |
| IITA-TMS-IBA30572 | -1.04 | -2.46 | 6.29 | -4.34 | -4.34 | 0.95 | -2.14 | -5.08 | -0.06 | 45.36 | 2.49 | -55.43 | 16 |
| TMS18F1310P0145 | 3.12 | 4.67 | 0.25 | -5.56 | -5.55 | 1.92 | -2.70 | -3.39 | 0.50 | -13.40 | 3.97 | -55.87 | 17 |
| IITA-TMS-IBA980581 | 3.12 | -4.94 | 9.60 | -3.26 | -3.25 | -3.55 | -3.91 | -5.08 | 0.09 | -38.14 | 6.55 | -93.27 | 18 |
| TMS18F1295P0036 | 3.12 | -4.78 | 7.65 | -13.74 | -13.75 | 2.07 | -7.81 | -10.17 | -0.52 | 45.36 | 59.70 | -170.58 | 19 |
| TMS18F1259P0139 | -33.33 | -7.80 | -12.22 | -7.78 | -7.78 | -1.14 | -4.69 | 1.69 | 0.06 | 14.43 | 1.14 | -173.61 | 20 |
| check_mean | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -20.44 | 21 |
Heatmaps
## TMS19F1219P0091 TMS19F1189P0046 TMS18F1295P0036 TMS18F1259P0139
## 1 1 1 1
## IITA-TMS-IBA000070 TMS18F1083P0032 TMS18F1139P0088 TMS18F1317P0102
## 2 2 2 2
## TMS18F1280P0121 TMS18F1258P0113 TMS18F1447P0005 TMS18F1339P0033
## 2 2 2 2
## TMS19F1011P0053 TMEB419 TMS18F1258P0114 TMS14F1036P0007
## 2 2 2 2
## check_mean TMS13F1160P0004 IITA-TMS-IBA30572 TMS18F1310P0145
## 2 3 3 3
## IITA-TMS-IBA980581
## 3
Correlation plots for traits and selection index comparism
Relationship between Traits and SINDEX
Selection index vs traits (%) difference to check mean
Percentage difference against checks mean
Genotype Images
IITA-TMS-IBA000070
| Trait | Value |
|---|---|
| FYLD | 37.87 |
| DYLD | 14.99 |
| DM | 40.89 |
| SINDEX | 106.80 |
TMS18F1083P0032
| Trait | Value |
|---|---|
| FYLD | 36.60 |
| DYLD | 14.88 |
| DM | 42.08 |
| SINDEX | 98.45 |
TMS19F1219P0091
| Trait | Value |
|---|---|
| FYLD | 38.33 |
| DYLD | 14.44 |
| DM | 37.81 |
| SINDEX | 91.42 |
TMS18F1139P0088
| Trait | Value |
|---|---|
| FYLD | 38.15 |
| DYLD | 14.77 |
| DM | 39.59 |
| SINDEX | 88.29 |
TMS18F1317P0102
| Trait | Value |
|---|---|
| FYLD | 36.48 |
| DYLD | 14.61 |
| DM | 40.84 |
| SINDEX | 57.63 |
TMS19F1189P0046
| Trait | Value |
|---|---|
| FYLD | 37.78 |
| DYLD | 14.24 |
| DM | 37.39 |
| SINDEX | 55.38 |
TMS18F1258P0113
| Trait | Value |
|---|---|
| FYLD | 36.74 |
| DYLD | 14.44 |
| DM | 39.71 |
| SINDEX | 35.78 |
TMS18F1447P0005
| Trait | Value |
|---|---|
| FYLD | 36.21 |
| DYLD | 14.46 |
| DM | 40.38 |
| SINDEX | 28.63 |
TMS18F1339P0033
| Trait | Value |
|---|---|
| FYLD | 36.53 |
| DYLD | 14.34 |
| DM | 39.42 |
| SINDEX | 26.03 |
TMS19F1011P0053
| Trait | Value |
|---|---|
| FYLD | 34.62 |
| DYLD | 14.38 |
| DM | 42.22 |
| SINDEX | 15.39 |
TMEB419
| Trait | Value |
|---|---|
| FYLD | 35.27 |
| DYLD | 14.26 |
| DM | 40.58 |
| SINDEX | -3.40 |
TMS18F1258P0114
| Trait | Value |
|---|---|
| FYLD | 35.30 |
| DYLD | 14.02 |
| DM | 39.34 |
| SINDEX | -20.63 |
TMS13F1160P0004
| Trait | Value |
|---|---|
| FYLD | 34.29 |
| DYLD | 14.05 |
| DM | 40.86 |
| SINDEX | -32.66 |
TMS14F1036P0007
| Trait | Value |
|---|---|
| FYLD | 34.72 |
| DYLD | 14.00 |
| DM | 39.62 |
| SINDEX | -44.70 |
IITA-TMS-IBA30572
| Trait | Value |
|---|---|
| FYLD | 33.36 |
| DYLD | 13.81 |
| DM | 40.61 |
| SINDEX | -55.43 |
TMS18F1310P0145
| Trait | Value |
|---|---|
| FYLD | 32.94 |
| DYLD | 13.73 |
| DM | 41.00 |
| SINDEX | -55.87 |
IITA-TMS-IBA980581
| Trait | Value |
|---|---|
| FYLD | 33.74 |
| DYLD | 13.56 |
| DM | 38.80 |
| SINDEX | -93.27 |
