Selections

Summary Statistics

21.GS.C4B.AYT.20.IB

Data summary
Name ayt20_sindex
Number of rows 21
Number of columns 13
_______________________
Column type frequency:
character 1
numeric 12
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
accession_name 0 1 7 18 0 21 0

Variable type: numeric

Data summary
skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
sprout 0 1 0.95 0.07 0.64 0.95 0.96 0.99 0.99 ▁▁▁▁▇
rtno 0 1 197.73 12.20 178.22 188.53 196.17 206.05 223.48 ▇▇▃▇▂
shtwt 0 1 48.02 4.10 40.56 45.82 48.48 49.11 59.73 ▃▇▇▂▁
rtwt 0 1 70.68 4.22 60.16 68.58 70.61 73.20 76.67 ▁▃▆▇▆
fyld 0 1 35.34 2.11 30.08 34.29 35.30 36.60 38.33 ▁▃▆▇▆
dm 0 1 40.17 1.23 37.39 39.59 40.38 40.89 42.22 ▂▁▇▇▃
dyld 0 1 14.20 0.49 13.01 14.00 14.26 14.46 14.99 ▁▃▆▇▆
hi 0 1 0.60 0.03 0.53 0.58 0.60 0.61 0.64 ▁▃▃▇▅
l 0 1 87.46 0.21 87.03 87.36 87.51 87.56 87.92 ▂▂▇▃▁
a 0 1 0.39 0.13 0.20 0.31 0.37 0.43 0.82 ▆▇▃▁▁
b 0 1 17.95 4.90 14.84 15.55 16.41 16.90 31.01 ▇▁▁▁▁
sindex 0 1 -0.97 79.64 -173.61 -44.70 15.39 55.38 106.80 ▂▁▇▇▇
Name ayt20_sindex_checkdiff
Number of rows 21
Number of columns 14
_______________________
Column type frequency:
character 1
factor 1
numeric 12
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
accession_name 0 1 7 18 0 21 0

Variable type: factor

skim_variable n_missing complete_rate ordered n_unique top_counts
rank 0 1 FALSE 21 1: 1, 2: 1, 3: 1, 4: 1

Variable type: numeric

skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
sprout 0 1 -1.39 7.73 -33.33 -1.04 0.00 3.12 3.12 ▁▁▁▁▇
rtno 0 1 2.30 6.31 -7.80 -2.46 1.49 6.60 15.62 ▇▇▃▇▂
shtwt 0 1 -1.13 8.44 -16.49 -5.66 -0.18 1.12 22.99 ▃▇▇▂▁
rtwt 0 1 1.34 6.05 -13.74 -1.67 1.24 4.95 9.93 ▁▃▆▇▆
fyld 0 1 1.33 6.05 -13.75 -1.68 1.22 4.95 9.91 ▁▃▆▇▆
dm 0 1 -0.14 3.05 -7.05 -1.58 0.38 1.65 4.96 ▂▁▇▇▃
dyld 0 1 0.61 3.49 -7.81 -0.79 1.05 2.47 6.22 ▁▃▆▇▆
hi 0 1 1.13 4.65 -10.17 -1.69 1.69 3.39 8.47 ▁▃▃▇▅
l 0 1 -0.03 0.24 -0.52 -0.14 0.03 0.09 0.50 ▂▂▇▃▁
a 0 1 19.34 40.31 -38.14 -4.12 14.43 32.99 153.61 ▆▇▃▁▁
b 0 1 10.44 30.13 -8.71 -4.34 0.95 3.97 90.77 ▇▁▁▁▁
sindex 0 1 -0.97 79.64 -173.61 -44.70 15.39 55.38 106.80 ▂▁▇▇▇

Phenotypic Values

Phenotypic Values and Selection Index

Raw phenotypic values difference from check mean

Check Mean Data

table include check_mean values

accession_name sprout rtno shtwt rtwt fyld dm dyld hi l a b sindex
IITA-TMS-IBA000070 0.95 190.48 43.85 75.75 37.87 40.89 14.99 0.64 87.70 0.25 15.55 106.80
TMS18F1083P0032 0.96 208.75 45.07 73.20 36.60 42.08 14.88 0.62 87.51 0.43 15.72 98.45
TMS19F1219P0091 0.96 189.58 59.73 76.67 38.33 37.81 14.44 0.57 87.10 0.53 31.01 91.42
TMS18F1139P0088 0.92 205.00 48.48 76.31 38.15 39.59 14.77 0.61 87.67 0.35 15.34 88.29
TMS18F1317P0102 0.92 189.13 49.38 72.96 36.48 40.84 14.61 0.60 87.40 0.47 14.99 57.63
TMS19F1189P0046 0.93 223.48 49.11 75.57 37.78 37.39 14.24 0.61 87.06 0.82 30.98 55.38
TMS18F1280P0121 0.99 209.35 44.47 72.17 36.09 41.37 14.61 0.62 87.34 0.31 16.41 46.37
TMS18F1258P0113 0.99 184.19 46.15 73.47 36.74 39.71 14.44 0.62 87.44 0.35 16.81 35.78
TMS18F1447P0005 0.95 203.51 45.82 72.42 36.21 40.38 14.46 0.61 87.53 0.30 16.11 28.63
TMS18F1339P0033 0.98 206.05 47.12 73.06 36.53 39.42 14.34 0.61 87.58 0.39 15.03 26.03
TMS19F1011P0053 0.99 205.75 40.56 69.23 34.62 42.22 14.38 0.64 87.52 0.38 14.84 15.39
TMEB419 0.96 196.17 47.09 70.53 35.27 40.58 14.26 0.60 87.29 0.42 14.93 -3.40
TMS18F1258P0114 0.95 209.95 48.91 70.61 35.30 39.34 14.02 0.59 87.58 0.39 16.66 -20.63
TMS13F1160P0004 0.93 186.14 48.98 68.58 34.29 40.86 14.05 0.58 87.36 0.36 17.13 -32.66
TMS14F1036P0007 0.98 214.67 46.63 69.43 34.72 39.62 14.00 0.60 87.56 0.24 15.94 -44.70
IITA-TMS-IBA30572 0.95 188.53 51.62 66.72 33.36 40.61 13.81 0.56 87.43 0.47 16.66 -55.43
TMS18F1310P0145 0.99 202.31 48.69 65.87 32.94 41.00 13.73 0.57 87.92 0.28 16.90 -55.87
IITA-TMS-IBA980581 0.99 183.74 53.23 67.47 33.74 38.80 13.56 0.56 87.56 0.20 17.32 -93.27
TMS18F1295P0036 0.99 184.04 52.28 60.16 30.08 41.06 13.01 0.53 87.03 0.47 25.96 -170.58
TMS18F1259P0139 0.64 178.22 42.63 64.32 32.16 39.77 13.45 0.60 87.54 0.37 16.44 -173.61
check_mean 0.96 193.29 48.57 69.75 34.88 40.23 14.11 0.59 87.48 0.32 16.25 -20.44

Table for percent comparism to check_mean values

accession_name sprout rtno shtwt rtwt fyld dm dyld hi l a b sindex rank
IITA-TMS-IBA000070 -1.04 -1.45 -9.71 8.61 8.59 1.65 6.22 8.47 0.25 -22.68 -4.34 106.80 1
TMS18F1083P0032 0.00 8.00 -7.20 4.95 4.95 4.61 5.44 5.08 0.03 32.99 -3.29 98.45 2
TMS19F1219P0091 0.00 -1.92 22.99 9.93 9.91 -6.01 2.33 -3.39 -0.44 63.92 90.77 91.42 3
TMS18F1139P0088 -4.17 6.06 -0.18 9.41 9.39 -1.58 4.67 3.39 0.21 8.25 -5.63 88.29 4
TMS18F1317P0102 -4.17 -2.15 1.67 4.61 4.60 1.52 3.53 1.69 -0.10 45.36 -7.78 57.63 5
TMS19F1189P0046 -3.12 15.62 1.12 8.35 8.33 -7.05 0.91 3.39 -0.48 153.61 90.59 55.38 6
TMS18F1280P0121 3.12 8.31 -8.44 3.47 3.48 2.84 3.53 5.08 -0.16 -4.12 0.95 46.37 7
TMS18F1258P0113 3.12 -4.71 -4.98 5.34 5.35 -1.28 2.33 5.08 -0.05 8.25 3.41 35.78 8
TMS18F1447P0005 -1.04 5.29 -5.66 3.83 3.83 0.38 2.47 3.39 0.05 -7.22 -0.89 28.63 9
TMS18F1339P0033 2.08 6.60 -2.98 4.75 4.75 -2.01 1.62 3.39 0.11 20.62 -7.54 26.03 10
TMS19F1011P0053 3.12 6.45 -16.49 -0.74 -0.73 4.96 1.90 8.47 0.04 17.53 -8.71 15.39 11
TMEB419 0.00 1.49 -3.04 1.12 1.13 0.88 1.05 1.69 -0.22 29.90 -8.15 -3.40 12
TMS18F1258P0114 -1.04 8.62 0.71 1.24 1.22 -2.20 -0.65 0.00 0.11 20.62 2.49 -20.63 13
TMS13F1160P0004 -3.12 -3.70 0.85 -1.67 -1.68 1.57 -0.44 -1.69 -0.14 11.34 5.38 -32.66 14
TMS14F1036P0007 2.08 11.06 -3.99 -0.45 -0.44 -1.51 -0.79 1.69 0.09 -25.77 -1.94 -44.70 15
IITA-TMS-IBA30572 -1.04 -2.46 6.29 -4.34 -4.34 0.95 -2.14 -5.08 -0.06 45.36 2.49 -55.43 16
TMS18F1310P0145 3.12 4.67 0.25 -5.56 -5.55 1.92 -2.70 -3.39 0.50 -13.40 3.97 -55.87 17
IITA-TMS-IBA980581 3.12 -4.94 9.60 -3.26 -3.25 -3.55 -3.91 -5.08 0.09 -38.14 6.55 -93.27 18
TMS18F1295P0036 3.12 -4.78 7.65 -13.74 -13.75 2.07 -7.81 -10.17 -0.52 45.36 59.70 -170.58 19
TMS18F1259P0139 -33.33 -7.80 -12.22 -7.78 -7.78 -1.14 -4.69 1.69 0.06 14.43 1.14 -173.61 20
check_mean 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -20.44 21

Heatmaps

##    TMS19F1219P0091    TMS19F1189P0046    TMS18F1295P0036    TMS18F1259P0139 
##                  1                  1                  1                  1 
## IITA-TMS-IBA000070    TMS18F1083P0032    TMS18F1139P0088    TMS18F1317P0102 
##                  2                  2                  2                  2 
##    TMS18F1280P0121    TMS18F1258P0113    TMS18F1447P0005    TMS18F1339P0033 
##                  2                  2                  2                  2 
##    TMS19F1011P0053            TMEB419    TMS18F1258P0114    TMS14F1036P0007 
##                  2                  2                  2                  2 
##         check_mean    TMS13F1160P0004  IITA-TMS-IBA30572    TMS18F1310P0145 
##                  2                  3                  3                  3 
## IITA-TMS-IBA980581 
##                  3

Correlation plots for traits and selection index comparism

Relationship between Traits and SINDEX

Selection index vs traits (%) difference to check mean

Percentage difference against checks mean



Genotype Images

IITA-TMS-IBA000070

Trait Value
FYLD 37.87
DYLD 14.99
DM 40.89
SINDEX 106.80



REP 1

REP 2



TMS18F1083P0032

Trait Value
FYLD 36.60
DYLD 14.88
DM 42.08
SINDEX 98.45



REP 1

TMS19F1219P0091

Trait Value
FYLD 38.33
DYLD 14.44
DM 37.81
SINDEX 91.42



REP 1

REP 2



TMS18F1139P0088

Trait Value
FYLD 38.15
DYLD 14.77
DM 39.59
SINDEX 88.29



REP 1

TMS18F1317P0102

Trait Value
FYLD 36.48
DYLD 14.61
DM 40.84
SINDEX 57.63


REP 2



TMS19F1189P0046

Trait Value
FYLD 37.78
DYLD 14.24
DM 37.39
SINDEX 55.38



REP 1

REP 2



TMS18F1258P0113

Trait Value
FYLD 36.74
DYLD 14.44
DM 39.71
SINDEX 35.78



REP 1

TMS18F1447P0005

Trait Value
FYLD 36.21
DYLD 14.46
DM 40.38
SINDEX 28.63



REP 1

REP 2



TMS18F1339P0033

Trait Value
FYLD 36.53
DYLD 14.34
DM 39.42
SINDEX 26.03


REP 2



TMS19F1011P0053

Trait Value
FYLD 34.62
DYLD 14.38
DM 42.22
SINDEX 15.39



REP 1

REP 2



TMEB419

Trait Value
FYLD 35.27
DYLD 14.26
DM 40.58
SINDEX -3.40



REP 1

REP 2



TMS18F1258P0114

Trait Value
FYLD 35.30
DYLD 14.02
DM 39.34
SINDEX -20.63



REP 1

TMS13F1160P0004

Trait Value
FYLD 34.29
DYLD 14.05
DM 40.86
SINDEX -32.66



REP 1

REP 2



TMS14F1036P0007

Trait Value
FYLD 34.72
DYLD 14.00
DM 39.62
SINDEX -44.70



REP 1

REP 2



IITA-TMS-IBA30572

Trait Value
FYLD 33.36
DYLD 13.81
DM 40.61
SINDEX -55.43



REP 1

REP 2



TMS18F1310P0145

Trait Value
FYLD 32.94
DYLD 13.73
DM 41.00
SINDEX -55.87


REP 2



IITA-TMS-IBA980581

Trait Value
FYLD 33.74
DYLD 13.56
DM 38.80
SINDEX -93.27



REP 1

REP 2